Although i admire what you have done it may have paid you to replace the quarter panel as i can see other bits in there that will need sorting.
Which bits if you don't mind me asking?
As I currently plan on replacing the doorstep along with bottom half of the rear quarter. I'm not sure if I'm using the full doorstep/quarter panel or sections as the repair panel does away with the diagonal overlap seam between the quarter panel and door step, witch will just bug the hell out of me. The end of the closing panel, a section of the inner sill, the inner sill stiffener (half replaced before, but while the access is good I might as well replace in full) and finally the full outer sill.
As I'm slowly working my way round poking the rusty or suspect bits, cleaning them up, welding if needed and prepping in readiness for a planned re-spray, all the while trying to keep the mini drivable at the same time.
Hence why I can't 'just replace the quarter panel' without first having a new panel and any other panels I might need, so its off the road for the shortest possible amount of time.
I've also taken a load of measurements and using a long steel rule comparing both sides, predictably the n/s quarter isn't as straight as it looks either. but from my measurements the wheel arch lips are with 2mm of each other and the o/s quarter has popped outwards along my drawn pencil lines above.
So I've had a go at knocking I back with a rubber mallet and off cut off wood. with at the moment has brought the panel back to about were it should be. it will probably sill need a light skin of filler and the front comer should pull out when the bottom half of the quarter is replaced.