The block gets pocketed not the head.
The main cost, if you're not doing the work yourself, is getting engine out of the car and stripped to a bare block then reassembled. The actual machining I don't believe should be all that expensive (I've never commissioned such work so don't know figures).
Over-carbed means that those carbs are too large (or there are to many of) for the capacity/output of the engine. Main issue will be getting them to flow a low enough volume of fuel to not be overly rich, there are other secondary problems as well (poor air/fuel mixing etc..).
What to do next? Depends what you want the car for. If it's just to tool around in as a daily-driver then you might find it behaves better reverted to a stock 998. If it's a play thing then you could start looking at what performance changes to make next, treating this as someone's unfinished project.











