At least you've found the problem now which is good news.
Being as we do live in a hard water area, you might want to use distilled water instead of ordinary water but personally I don't bother.
You need to use the blue anti-freeze when you get it built back up, but notice on the bottle that it only has a working life of 2 years so put a note in your diary. Now that you're quite familiar with the cooling system, it really doesn't take much to drain and flush the system and top back up with anti-freeze every two years. People seem to think it lasts forever and ignore it, but as you've found out it deteriorates, causes corrosion and slowly stops doing the job it was intended to do.
Keep us posted on how you get on...and maybe a picture of the now healthy patient with its new silicon hoses fitted