You did not include adding stiffners in your description of the work, so it is reasonable to assume that you have not done it.
Let's see a picture then, so the OP can see what he needs to do.
The most practicable way of adding the stiffner is to do it as you go. When you grind off a length of seam, which totals 1.8mm thick, you will be left with a small gap due to the bend radius at the base of the flange, so you just insert a new internal stiffner, 1.8mm thick and same width as the old seam, in the gap, and seam weld it. As well as filling the gap, it replaces the stiffness. That will leave a lot of shortish inserts of internal stiffner, and the final action is to weld their ends together.
The stiffner is most needed at the rear corners, and you also need something between A panel and front wing, not forgetting to stiffen the wheel arch flange, by fitting 14A7602 (often forgotten during restorations) or the large wheel arch edge stiffners. Personally, I would always add an internal stiffner to the A pillars too, easiest if you are having to change either the windscreen surround or door frame.