If it 1000 cc it has not been bored. (998 is as near 1000 as you can get). Best head will be a 12G295 suitably gas-flowed with better induction & exhaust and with a compression ratio of around 10:1.
If intending to fit forced induction later it may not be worth doing a higher powered normally aspirated engine. This is because to get a N/A engine to work the compression ratio will need to be increased and the head gas-flowed to achieve. Then to go to a forced induction the compression ratio will need to be seriously reduced which will probably mean a new head together with new pistons.
Building a forced induction engine is not just a case of bolting on a turbo-charger or a supercharger. The entire engine must be re-built with the correct parts for the forced induction.
I mention this because I once had to repair the mess caused by someone who did not understand this. It cost over £1500 to put right with all new Omega pistons, as different head with larger combustion chambers, full strip and rebuild plus some other bits to make it correct. Even when this has been done a Mini is still not going to be a quick car, just not quire so slow
.