There should definitely be two dowels, but to get on with your rebuild, mark the exposed end and move the remaining dowel from the timing chain end of your block to the flywheel end.
Only lightly do up four screws through the four corners of the gearbox, into the block.
Fit the aluminium transfer casing and nip the nuts. This should pull the gearbox into place under the block.
Check that the empty dowel hole in the gearbox is concentric with the dowel hole in the block.
If it is, insert the remaining gearbox / block screws and torque them all.
If the empty dowel holes are not aligned, wait until you have retrieved your missing dowel from the machine shop.
Observation and common sense should enable you to line up orifice in the cam bearings with the oil-ways in the block.
Edited by DeadSquare, 11 November 2023 - 02:51 PM.