Glad you found the leak without it ruining any paint.
You should be able to get a full pedal with Metho in the system, though, I never bother, I just get enough of a pedal to be able to get some pressure in the system to check for leaks under pressure. Just don't drive with it in there and be sure to drain the system as much as you can and flush through with brake fluid to get it all out. I lower the level in the reservoir but don't let it run dry, then add the brake fluid.
I didn't use too much care when I used the methylated spirits, it was more of a flush and pressure check for leaks. I will flush with brake fluid before the final bleed.
Getting close to dropping the engine in now...